diff --git a/android/java/apk_for_test.flags b/android/java/apk_for_test.flags
index de977c82f28..5034112b542 100644
--- a/android/java/apk_for_test.flags
+++ b/android/java/apk_for_test.flags
@@ -49,9 +49,6 @@
     *** mMvtContentFits;
     *** mProfile;
     *** initializeSiteSectionView(...);
-    *** setSearchProviderTopMargin(...);
-    *** setSearchProviderBottomMargin(...);
-    *** getLogoMargin(...);
     *** calculateTabletMvtWidth(...);
     *** updateMvtOnTablet(...);
     *** isInNarrowWindowOnTablet(...);
diff --git a/android/javatests/org/chromium/chrome/browser/BytecodeTest.java b/android/javatests/org/chromium/chrome/browser/BytecodeTest.java
index b258d74598d..5acb404b031 100644
--- a/android/javatests/org/chromium/chrome/browser/BytecodeTest.java
+++ b/android/javatests/org/chromium/chrome/browser/BytecodeTest.java
@@ -473,25 +473,6 @@ public class BytecodeTest {
                         "initializeSiteSectionView",
                         MethodModifier.REGULAR,
                         void.class));
-        Assert.assertTrue(
-                methodExists(
-                        "org/chromium/chrome/browser/ntp/NewTabPageLayout",
-                        "setSearchProviderTopMargin",
-                        MethodModifier.REGULAR,
-                        void.class));
-        Assert.assertTrue(
-                methodExists(
-                        "org/chromium/chrome/browser/ntp/NewTabPageLayout",
-                        "setSearchProviderBottomMargin",
-                        MethodModifier.REGULAR,
-                        void.class));
-        Assert.assertTrue(
-                methodExists(
-                        "org/chromium/chrome/browser/ntp/NewTabPageLayout",
-                        "getLogoMargin",
-                        MethodModifier.REGULAR,
-                        int.class,
-                        boolean.class));
         Assert.assertTrue(
                 methodExists(
                         "org/chromium/chrome/browser/ntp/NewTabPageLayout",
diff --git a/build/android/bytecode/java/org/brave/bytecode/BraveNewTabPageLayoutClassAdapter.java b/build/android/bytecode/java/org/brave/bytecode/BraveNewTabPageLayoutClassAdapter.java
index d8ef56575a3..0d5a901ab49 100644
--- a/build/android/bytecode/java/org/brave/bytecode/BraveNewTabPageLayoutClassAdapter.java
+++ b/build/android/bytecode/java/org/brave/bytecode/BraveNewTabPageLayoutClassAdapter.java
@@ -31,25 +31,10 @@ public class BraveNewTabPageLayoutClassAdapter extends BraveClassVisitor {
                 "initializeSiteSectionView",
                 "Ljava/lang/Override;");
 
-        makePublicMethod(sNewTabPageLayoutClassName, "setSearchProviderTopMargin");
-        addMethodAnnotation(
-                sBraveNewTabPageLayoutClassName,
-                "setSearchProviderTopMargin",
-                "Ljava/lang/Override;");
-
-        makePublicMethod(sNewTabPageLayoutClassName, "setSearchProviderBottomMargin");
-        addMethodAnnotation(
-                sBraveNewTabPageLayoutClassName,
-                "setSearchProviderBottomMargin",
-                "Ljava/lang/Override;");
-
         makePublicMethod(sNewTabPageLayoutClassName, "calculateTabletMvtWidth");
         addMethodAnnotation(
                 sBraveNewTabPageLayoutClassName, "calculateTabletMvtWidth", "Ljava/lang/Override;");
 
-        deleteMethod(sBraveNewTabPageLayoutClassName, "getLogoMargin");
-        makePublicMethod(sNewTabPageLayoutClassName, "getLogoMargin");
-
         deleteMethod(sBraveNewTabPageLayoutClassName, "updateMvtOnTablet");
         makePublicMethod(sNewTabPageLayoutClassName, "updateMvtOnTablet");