diff --git a/android/java/org/chromium/chrome/browser/settings/BraveMainPreferencesBase.java b/android/java/org/chromium/chrome/browser/settings/BraveMainPreferencesBase.java
index d77440bc838..e800811ef6c 100644
--- a/android/java/org/chromium/chrome/browser/settings/BraveMainPreferencesBase.java
+++ b/android/java/org/chromium/chrome/browser/settings/BraveMainPreferencesBase.java
@@ -57,6 +57,8 @@ import org.chromium.components.browser_ui.settings.SettingsUtils;
 import org.chromium.components.browser_ui.settings.search.PreferenceParser;
 import org.chromium.components.browser_ui.settings.search.SearchIndexProvider;
 import org.chromium.components.browser_ui.settings.search.SettingsIndexData;
+import org.chromium.components.browser_ui.site_settings.BraveSiteSettingsPreferencesBase;
+import org.chromium.components.browser_ui.site_settings.SiteSettings;
 import org.chromium.components.user_prefs.UserPrefs;
 import org.chromium.ui.base.DeviceFormFactor;
 
@@ -707,6 +709,27 @@ public abstract class BraveMainPreferencesBase extends BravePreferenceFragment
                     if (!BraveSearchWidgetUtils.isRequestPinAppWidgetSupported()) {
                         indexData.removeEntry(getUniqueId(PREF_HOME_SCREEN_WIDGET));
                     }
+                    // Remove features disabled by Brave Origin or enterprise policy.
+                    if (BraveLeoPrefUtils.isLeoDisabledByPolicy(profile)) {
+                        indexData.removeEntry(getUniqueId(PREF_BRAVE_LEO));
+                    }
+                    if (BraveNewsPolicy.isDisabledByPolicy(profile)) {
+                        indexData.removeEntry(getUniqueId(PREF_BRAVE_NEWS_V2));
+                    }
+                    if (BraveVpnPolicy.isDisabledByPolicy(profile)) {
+                        indexData.removeEntry(getUniqueId(PREF_BRAVE_VPN));
+                    }
+                    if (BraveWalletPolicy.isDisabledByPolicy(profile)) {
+                        indexData.removeEntry(getUniqueId(PREF_BRAVE_WALLET));
+                        // Also remove wallet-related entries from site settings.
+                        String siteSettingsFrag = SiteSettings.class.getName();
+                        indexData.removeEntryForKey(
+                                siteSettingsFrag,
+                                BraveSiteSettingsPreferencesBase.ETHEREUM_CONNECTED_SITES_KEY);
+                        indexData.removeEntryForKey(
+                                siteSettingsFrag,
+                                BraveSiteSettingsPreferencesBase.SOLANA_CONNECTED_SITES_KEY);
+                    }
                 }
             };
 }
diff --git a/android/java/org/chromium/chrome/browser/settings/BraveSearchEnginesPreferences.java b/android/java/org/chromium/chrome/browser/settings/BraveSearchEnginesPreferences.java
index 295e67915df..1641eef5f03 100644
--- a/android/java/org/chromium/chrome/browser/settings/BraveSearchEnginesPreferences.java
+++ b/android/java/org/chromium/chrome/browser/settings/BraveSearchEnginesPreferences.java
@@ -268,7 +268,9 @@ public class BraveSearchEnginesPreferences extends BravePreferenceFragment
                                     profile.getPrimaryOtrProfile(/* createIfNeeded= */ true),
                                     true));
 
-                    if (!BraveConfig.WEB_DISCOVERY_ENABLED) {
+                    if (!BraveConfig.WEB_DISCOVERY_ENABLED
+                            || UserPrefs.get(profile)
+                                    .isManagedPreference(WebDiscoveryPrefs.WEB_DISCOVERY_ENABLED)) {
                         indexData.removeEntryForKey(frag, PREF_SEND_WEB_DISCOVERY);
                     } else {
                         indexData.updateEntryForKey(
diff --git a/components/browser_ui/site_settings/android/java/src/org/chromium/components/browser_ui/site_settings/BraveSiteSettingsPreferencesBase.java b/components/browser_ui/site_settings/android/java/src/org/chromium/components/browser_ui/site_settings/BraveSiteSettingsPreferencesBase.java
index b18a5182faa..1c6c2844d25 100644
--- a/components/browser_ui/site_settings/android/java/src/org/chromium/components/browser_ui/site_settings/BraveSiteSettingsPreferencesBase.java
+++ b/components/browser_ui/site_settings/android/java/src/org/chromium/components/browser_ui/site_settings/BraveSiteSettingsPreferencesBase.java
@@ -20,8 +20,8 @@ public class BraveSiteSettingsPreferencesBase extends BaseSiteSettingsFragment {
     private static final String IDLE_DETECTION = "idle_detection";
     private static final String DIVIDER_KEY = "divider";
     private static final String PERMISSION_AUTOREVOCATION_KEY = "permission_autorevocation";
-    private static final String ETHEREUM_CONNECTED_SITES_KEY = "ethereum_connected_sites";
-    private static final String SOLANA_CONNECTED_SITES_KEY = "solana_connected_sites";
+    public static final String ETHEREUM_CONNECTED_SITES_KEY = "ethereum_connected_sites";
+    public static final String SOLANA_CONNECTED_SITES_KEY = "solana_connected_sites";
 
     private final HashMap<String, Preference> mRemovedPreferences = new HashMap<>();